Module: Bio::Ucsc::BraFlo1

Extended by:
TableClassDetector
Defined in:
lib/bio-ucsc/braflo1.rb,
lib/bio-ucsc/braflo1/gap.rb,
lib/bio-ucsc/braflo1/gold.rb,
lib/bio-ucsc/braflo1/chainmm9.rb,
lib/bio-ucsc/braflo1/chainhg18.rb,
lib/bio-ucsc/braflo1/chaingalgal3.rb,
lib/bio-ucsc/braflo1/chainmm9link.rb,
lib/bio-ucsc/braflo1/chainpetmar1.rb,
lib/bio-ucsc/braflo1/chainhg18link.rb,
lib/bio-ucsc/braflo1/chaingalgal3link.rb,
lib/bio-ucsc/braflo1/chainpetmar1link.rb

Defined Under Namespace

Classes: ChainGalGal3, ChainGalGal3Link, ChainHg18, ChainHg18Link, ChainMm9, ChainMm9Link, ChainPetMar1, ChainPetMar1Link, DBConnection, Gap, Gold

Constant Summary collapse

CHROMS = 
%w(chrUn chrM)

Constants included from TableClassDetector

TableClassDetector::COMMON_CLASS_METHODS, TableClassDetector::PARAMETERS, TableClassDetector::RESERVED_METHODS, TableClassDetector::UPPERCASED_TABLE_PREFIX

Class Method Summary collapse

Methods included from TableClassDetector

bed, const_missing, genepred, generic, psl, rmsk

Class Method Details

.connect(param = Hash.new) ⇒ Object 



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# File 'lib/bio-ucsc/braflo1.rb', line 21

def self.connect(param = Hash.new)
  DBConnection.db_adapter = param[:db_adapter] if param[:db_adapter]
  DBConnection.db_host = param[:db_host] if param[:db_host]
  DBConnection.db_username = param[:db_username] if param[:db_username]
  DBConnection.password = param[:password] if param[:password]
  DBConnection.connect
end

.default ⇒ Object 



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# File 'lib/bio-ucsc/braflo1.rb', line 17

def self.default
  DBConnection.default
end