Module: Bio

Defined in:

lib/bio-ucsc/gi.rb,
lib/bio-ucsc.rb,
lib/bio-ucsc/go.rb,
lib/bio-ucsc/cb3.rb,
lib/bio-ucsc/ce6.rb,
lib/bio-ucsc/ci2.rb,
lib/bio-ucsc/dm3.rb,
lib/bio-ucsc/dp3.rb,
lib/bio-ucsc/fr2.rb,
lib/bio-ucsc/mm9.rb,
lib/bio-ucsc/rn4.rb,
lib/bio-ucsc/rn5.rb,
lib/bio-ucsc/hg18.rb,
lib/bio-ucsc/hg19.rb,
lib/bio-ucsc/hg38.rb,
lib/bio-ucsc/mm10.rb,
lib/bio-ucsc/caepb2.rb,
lib/bio-ucsc/schema.rb,
lib/bio-ucsc/ailmel1.rb,
lib/bio-ucsc/anocar2.rb,
lib/bio-ucsc/anogam1.rb,
lib/bio-ucsc/apimel2.rb,
lib/bio-ucsc/aplcal1.rb,
lib/bio-ucsc/bostau4.rb,
lib/bio-ucsc/braflo1.rb,
lib/bio-ucsc/caejap1.rb,
lib/bio-ucsc/caerem3.rb,
lib/bio-ucsc/caljac3.rb,
lib/bio-ucsc/canfam2.rb,
lib/bio-ucsc/cavpor3.rb,
lib/bio-ucsc/cb3/est.rb,
lib/bio-ucsc/cb3/gap.rb,
lib/bio-ucsc/ce6/est.rb,
lib/bio-ucsc/ce6/gap.rb,
lib/bio-ucsc/danrer7.rb,
lib/bio-ucsc/dm3/est.rb,
lib/bio-ucsc/dm3/gap.rb,
lib/bio-ucsc/dp3/est.rb,
lib/bio-ucsc/dp3/gap.rb,
lib/bio-ucsc/droana2.rb,
lib/bio-ucsc/droere1.rb,
lib/bio-ucsc/drogri1.rb,
lib/bio-ucsc/dromoj2.rb,
lib/bio-ucsc/droper1.rb,
lib/bio-ucsc/drosec1.rb,
lib/bio-ucsc/drosim1.rb,
lib/bio-ucsc/drovir2.rb,
lib/bio-ucsc/droyak2.rb,
lib/bio-ucsc/equcab2.rb,
lib/bio-ucsc/felcat4.rb,
lib/bio-ucsc/fr2/est.rb,
lib/bio-ucsc/fr2/gap.rb,
lib/bio-ucsc/galgal4.rb,
lib/bio-ucsc/gasacu1.rb,
lib/bio-ucsc/hgfixed.rb,
lib/bio-ucsc/loxafr3.rb,
lib/bio-ucsc/mm9/est.rb,
lib/bio-ucsc/mm9/gap.rb,
lib/bio-ucsc/mondom5.rb,
lib/bio-ucsc/ornana1.rb,
lib/bio-ucsc/orycun2.rb,
lib/bio-ucsc/orylat2.rb,
lib/bio-ucsc/oviari1.rb,
lib/bio-ucsc/pantro3.rb,
lib/bio-ucsc/petmar1.rb,
lib/bio-ucsc/ponabe2.rb,
lib/bio-ucsc/pripac1.rb,
lib/bio-ucsc/rhemac2.rb,
lib/bio-ucsc/rn4/est.rb,
lib/bio-ucsc/rn4/gap.rb,
lib/bio-ucsc/rn5/est.rb,
lib/bio-ucsc/rn5/gap.rb,
lib/bio-ucsc/saccer2.rb,
lib/bio-ucsc/strpur2.rb,
lib/bio-ucsc/susscr2.rb,
lib/bio-ucsc/taegut1.rb,
lib/bio-ucsc/tetnig2.rb,
lib/bio-ucsc/uniprot.rb,
lib/bio-ucsc/xentro2.rb,
lib/bio-ucsc/cb3/gold.rb,
lib/bio-ucsc/cb3/mrna.rb,
lib/bio-ucsc/cb3/rmsk.rb,
lib/bio-ucsc/ce6/gold.rb,
lib/bio-ucsc/ce6/mrna.rb,
lib/bio-ucsc/ce6/rmsk.rb,
lib/bio-ucsc/dm3/gold.rb,
lib/bio-ucsc/dm3/mrna.rb,
lib/bio-ucsc/dm3/rmsk.rb,
lib/bio-ucsc/dp3/gold.rb,
lib/bio-ucsc/dp3/mrna.rb,
lib/bio-ucsc/dp3/rmsk.rb,
lib/bio-ucsc/fr2/gold.rb,
lib/bio-ucsc/fr2/mrna.rb,
lib/bio-ucsc/fr2/rmsk.rb,
lib/bio-ucsc/hg18/gap.rb,
lib/bio-ucsc/mm10/est.rb,
lib/bio-ucsc/mm9/gold.rb,
lib/bio-ucsc/mm9/mrna.rb,
lib/bio-ucsc/mm9/rmsk.rb,
lib/bio-ucsc/proteome.rb,
lib/bio-ucsc/rn4/gold.rb,
lib/bio-ucsc/rn4/mrna.rb,
lib/bio-ucsc/rn4/rmsk.rb,
lib/bio-ucsc/rn5/gold.rb,
lib/bio-ucsc/rn5/mrna.rb,
lib/bio-ucsc/rn5/rmsk.rb,
lib/bio-ucsc/ucsc_bin.rb,
lib/bio-ucsc/visigene.rb,
lib/bio-ucsc/hg18/gold.rb,
lib/bio-ucsc/hg18/rmsk.rb,
lib/bio-ucsc/mm10/mrna.rb,
lib/bio-ucsc/reference.rb,
lib/bio-ucsc/caepb2/gap.rb,
lib/bio-ucsc/anogam1/est.rb,
lib/bio-ucsc/anogam1/gap.rb,
lib/bio-ucsc/braflo1/gap.rb,
lib/bio-ucsc/caejap1/gap.rb,
lib/bio-ucsc/caepb2/gold.rb,
lib/bio-ucsc/caerem3/gap.rb,
lib/bio-ucsc/canfam2/est.rb,
lib/bio-ucsc/canfam2/gap.rb,
lib/bio-ucsc/drosim1/est.rb,
lib/bio-ucsc/drosim1/gap.rb,
lib/bio-ucsc/droyak2/est.rb,
lib/bio-ucsc/droyak2/gap.rb,
lib/bio-ucsc/equcab2/est.rb,
lib/bio-ucsc/equcab2/gap.rb,
lib/bio-ucsc/file/twobit.rb,
lib/bio-ucsc/gasacu1/est.rb,
lib/bio-ucsc/ponabe2/est.rb,
lib/bio-ucsc/ponabe2/gap.rb,
lib/bio-ucsc/pripac1/gap.rb,
lib/bio-ucsc/saccer2/est.rb,
lib/bio-ucsc/saccer2/gap.rb,
lib/bio-ucsc/susscr2/est.rb,
lib/bio-ucsc/taegut1/est.rb,
lib/bio-ucsc/taegut1/gap.rb,
lib/bio-ucsc/anogam1/gold.rb,
lib/bio-ucsc/anogam1/mrna.rb,
lib/bio-ucsc/anogam1/rmsk.rb,
lib/bio-ucsc/braflo1/gold.rb,
lib/bio-ucsc/caejap1/gold.rb,
lib/bio-ucsc/caerem3/gold.rb,
lib/bio-ucsc/canfam2/gold.rb,
lib/bio-ucsc/canfam2/mrna.rb,
lib/bio-ucsc/canfam2/rmsk.rb,
lib/bio-ucsc/cb3/chaince6.rb,
lib/bio-ucsc/ce6/chaincb3.rb,
lib/bio-ucsc/dm3/chaindp3.rb,
lib/bio-ucsc/dp3/chaindm3.rb,
lib/bio-ucsc/drosim1/gold.rb,
lib/bio-ucsc/drosim1/mrna.rb,
lib/bio-ucsc/drosim1/rmsk.rb,
lib/bio-ucsc/droyak2/gold.rb,
lib/bio-ucsc/droyak2/mrna.rb,
lib/bio-ucsc/droyak2/rmsk.rb,
lib/bio-ucsc/equcab2/gold.rb,
lib/bio-ucsc/equcab2/mrna.rb,
lib/bio-ucsc/equcab2/rmsk.rb,
lib/bio-ucsc/fr2/chainmm9.rb,
lib/bio-ucsc/gasacu1/mrna.rb,
lib/bio-ucsc/gasacu1/rmsk.rb,
lib/bio-ucsc/mm9/chainfr2.rb,
lib/bio-ucsc/mm9/chainrn4.rb,
lib/bio-ucsc/ponabe2/gold.rb,
lib/bio-ucsc/ponabe2/mrna.rb,
lib/bio-ucsc/ponabe2/rmsk.rb,
lib/bio-ucsc/pripac1/gold.rb,
lib/bio-ucsc/pripac1/rmsk.rb,
lib/bio-ucsc/rn4/chainmm9.rb,
lib/bio-ucsc/rn5/chainmm9.rb,
lib/bio-ucsc/saccer2/gold.rb,
lib/bio-ucsc/saccer2/mrna.rb,
lib/bio-ucsc/susscr2/mrna.rb,
lib/bio-ucsc/taegut1/gold.rb,
lib/bio-ucsc/taegut1/mrna.rb,
lib/bio-ucsc/taegut1/rmsk.rb,
lib/bio-ucsc/tetnig2/mrna.rb,
lib/bio-ucsc/cb3/intronest.rb,
lib/bio-ucsc/ce6/chainself.rb,
lib/bio-ucsc/ce6/intronest.rb,
lib/bio-ucsc/dm3/intronest.rb,
lib/bio-ucsc/dp3/intronest.rb,
lib/bio-ucsc/fr2/intronest.rb,
lib/bio-ucsc/hg18/chainfr2.rb,
lib/bio-ucsc/hg18/chainmm9.rb,
lib/bio-ucsc/hg18/chainrn4.rb,
lib/bio-ucsc/mm10/gbstatus.rb,
lib/bio-ucsc/mm9/intronest.rb,
lib/bio-ucsc/rn4/intronest.rb,
lib/bio-ucsc/rn5/intronest.rb,
lib/bio-ucsc/file/bytequeue.rb,
lib/bio-ucsc/hg18/chainself.rb,
lib/bio-ucsc/hg18/intronest.rb,
lib/bio-ucsc/hg18/rmskrm327.rb,
lib/bio-ucsc/mm10/intronest.rb,
lib/bio-ucsc/caepb2/chaince6.rb,
lib/bio-ucsc/cb3/chaincaepb1.rb,
lib/bio-ucsc/ce6/chaincaepb2.rb,
lib/bio-ucsc/hg19/gbcdnainfo.rb,
lib/bio-ucsc/anogam1/chaindm3.rb,
lib/bio-ucsc/apimel2/chaindm2.rb,
lib/bio-ucsc/braflo1/chainmm9.rb,
lib/bio-ucsc/caejap1/chaince6.rb,
lib/bio-ucsc/caerem3/chaince6.rb,
lib/bio-ucsc/canfam2/chainmm9.rb,
lib/bio-ucsc/canfam2/chainrn4.rb,
lib/bio-ucsc/cb3/chaincaerem2.rb,
lib/bio-ucsc/cb3/chaince6link.rb,
lib/bio-ucsc/cb3/chainpripac1.rb,
lib/bio-ucsc/ce6/chaincaejap1.rb,
lib/bio-ucsc/ce6/chaincaerem3.rb,
lib/bio-ucsc/ce6/chaincb3link.rb,
lib/bio-ucsc/ce6/chainpripac1.rb,
lib/bio-ucsc/dm3/chainanogam1.rb,
lib/bio-ucsc/dm3/chainapimel3.rb,
lib/bio-ucsc/dm3/chaindp3link.rb,
lib/bio-ucsc/dm3/chaindroana2.rb,
lib/bio-ucsc/dm3/chaindroere1.rb,
lib/bio-ucsc/dm3/chaindroper1.rb,
lib/bio-ucsc/dm3/chaindrosec1.rb,
lib/bio-ucsc/dm3/chaindrosim1.rb,
lib/bio-ucsc/dm3/chaindroyak2.rb,
lib/bio-ucsc/dp3/chaindm3link.rb,
lib/bio-ucsc/drosim1/chaindm3.rb,
lib/bio-ucsc/droyak2/chaindm3.rb,
lib/bio-ucsc/fr2/chaingalgal3.rb,
lib/bio-ucsc/fr2/chaingasacu1.rb,
lib/bio-ucsc/fr2/chainmm9link.rb,
lib/bio-ucsc/fr2/chainorylat2.rb,
lib/bio-ucsc/gasacu1/chainfr2.rb,
lib/bio-ucsc/gasacu1/chainmm9.rb,
lib/bio-ucsc/hg19/description.rb,
lib/bio-ucsc/mm9/chainbraflo1.rb,
lib/bio-ucsc/mm9/chaincanfam2.rb,
lib/bio-ucsc/mm9/chaincavpor3.rb,
lib/bio-ucsc/mm9/chainfr2link.rb,
lib/bio-ucsc/mm9/chaingalgal3.rb,
lib/bio-ucsc/mm9/chaingasacu1.rb,
lib/bio-ucsc/mm9/chainornana1.rb,
lib/bio-ucsc/mm9/chainorylat2.rb,
lib/bio-ucsc/mm9/chainpetmar1.rb,
lib/bio-ucsc/mm9/chainponabe2.rb,
lib/bio-ucsc/mm9/chainrhemac2.rb,
lib/bio-ucsc/mm9/chainrn4link.rb,
lib/bio-ucsc/ponabe2/chainmm9.rb,
lib/bio-ucsc/pripac1/chaincb3.rb,
lib/bio-ucsc/pripac1/chaince6.rb,
lib/bio-ucsc/rhemac2/chainmm9.rb,
lib/bio-ucsc/rhemac2/chainrn4.rb,
lib/bio-ucsc/rn4/chaincanfam2.rb,
lib/bio-ucsc/rn4/chaincavpor3.rb,
lib/bio-ucsc/rn4/chaindanrer4.rb,
lib/bio-ucsc/rn4/chainequcab1.rb,
lib/bio-ucsc/rn4/chaingalgal3.rb,
lib/bio-ucsc/rn4/chainmm9link.rb,
lib/bio-ucsc/rn4/chainmondom4.rb,
lib/bio-ucsc/rn4/chainpantro2.rb,
lib/bio-ucsc/rn4/chainrhemac2.rb,
lib/bio-ucsc/rn5/chaincanfam2.rb,
lib/bio-ucsc/rn5/chaincavpor3.rb,
lib/bio-ucsc/rn5/chaindanrer4.rb,
lib/bio-ucsc/rn5/chainequcab1.rb,
lib/bio-ucsc/rn5/chaingalgal3.rb,
lib/bio-ucsc/rn5/chainmm9link.rb,
lib/bio-ucsc/rn5/chainmondom4.rb,
lib/bio-ucsc/rn5/chainpantro2.rb,
lib/bio-ucsc/rn5/chainrhemac2.rb,
lib/bio-ucsc/anogam1/intronest.rb,
lib/bio-ucsc/braflo1/chainhg18.rb,
lib/bio-ucsc/canfam2/chainself.rb,
lib/bio-ucsc/canfam2/intronest.rb,
lib/bio-ucsc/ce6/chainselflink.rb,
lib/bio-ucsc/drosim1/intronest.rb,
lib/bio-ucsc/droyak2/intronest.rb,
lib/bio-ucsc/equcab2/intronest.rb,
lib/bio-ucsc/gasacu1/intronest.rb,
lib/bio-ucsc/hg18/chainanocar1.rb,
lib/bio-ucsc/hg18/chainbostau4.rb,
lib/bio-ucsc/hg18/chainbraflo1.rb,
lib/bio-ucsc/hg18/chaincaljac1.rb,
lib/bio-ucsc/hg18/chaincanfam2.rb,
lib/bio-ucsc/hg18/chaincavpor3.rb,
lib/bio-ucsc/hg18/chaindanrer5.rb,
lib/bio-ucsc/hg18/chainequcab1.rb,
lib/bio-ucsc/hg18/chainfelcat3.rb,
lib/bio-ucsc/hg18/chaingalgal3.rb,
lib/bio-ucsc/hg18/chaingasacu1.rb,
lib/bio-ucsc/hg18/chainmondom4.rb,
lib/bio-ucsc/hg18/chainornana1.rb,
lib/bio-ucsc/hg18/chainorylat2.rb,
lib/bio-ucsc/hg18/chainpantro2.rb,
lib/bio-ucsc/hg18/chainpetmar1.rb,
lib/bio-ucsc/hg18/chainponabe2.rb,
lib/bio-ucsc/hg18/chainrhemac2.rb,
lib/bio-ucsc/hg18/chainstrpur2.rb,
lib/bio-ucsc/hg18/chaintaegut1.rb,
lib/bio-ucsc/hg18/chaintetnig2.rb,
lib/bio-ucsc/hg18/chainxentro2.rb,
lib/bio-ucsc/ponabe2/intronest.rb,
lib/bio-ucsc/saccer2/intronest.rb,
lib/bio-ucsc/susscr2/intronest.rb,
lib/bio-ucsc/taegut1/intronest.rb,
lib/bio-ucsc/ce6/t25mersrepeats.rb,
lib/bio-ucsc/caepb2/chaince6link.rb,
lib/bio-ucsc/cb3/chaincaepb1link.rb,
lib/bio-ucsc/ce6/chaincaepb2link.rb,
lib/bio-ucsc/pripac1/chaincaepb1.rb,
lib/bio-ucsc/anogam1/chaindm3link.rb,
lib/bio-ucsc/apimel2/chaindm2link.rb,
lib/bio-ucsc/braflo1/chaingalgal3.rb,
lib/bio-ucsc/braflo1/chainmm9link.rb,
lib/bio-ucsc/braflo1/chainpetmar1.rb,
lib/bio-ucsc/caejap1/chaince6link.rb,
lib/bio-ucsc/caerem3/chaince6link.rb,
lib/bio-ucsc/canfam2/chainbostau4.rb,
lib/bio-ucsc/canfam2/chainmm9link.rb,
lib/bio-ucsc/canfam2/chainrn4link.rb,
lib/bio-ucsc/cb3/chaincaerem2link.rb,
lib/bio-ucsc/cb3/chainpripac1link.rb,
lib/bio-ucsc/ce6/chaincaejap1link.rb,
lib/bio-ucsc/ce6/chaincaerem3link.rb,
lib/bio-ucsc/ce6/chainpripac1link.rb,
lib/bio-ucsc/dm3/chainanogam1link.rb,
lib/bio-ucsc/dm3/chainapimel3link.rb,
lib/bio-ucsc/dm3/chaindroana2link.rb,
lib/bio-ucsc/dm3/chaindroere1link.rb,
lib/bio-ucsc/dm3/chaindroper1link.rb,
lib/bio-ucsc/dm3/chaindrosec1link.rb,
lib/bio-ucsc/dm3/chaindrosim1link.rb,
lib/bio-ucsc/dm3/chaindroyak2link.rb,
lib/bio-ucsc/drosim1/chaindm3link.rb,
lib/bio-ucsc/droyak2/chaindm3link.rb,
lib/bio-ucsc/fr2/chaingalgal3link.rb,
lib/bio-ucsc/fr2/chaingasacu1link.rb,
lib/bio-ucsc/fr2/chainorylat2link.rb,
lib/bio-ucsc/gasacu1/chainanocar1.rb,
lib/bio-ucsc/gasacu1/chainfr2link.rb,
lib/bio-ucsc/gasacu1/chaingalgal3.rb,
lib/bio-ucsc/gasacu1/chainmm9link.rb,
lib/bio-ucsc/gasacu1/chainorylat2.rb,
lib/bio-ucsc/genomic-interval-bin.rb,
lib/bio-ucsc/mm9/chainbraflo1link.rb,
lib/bio-ucsc/mm9/chaincanfam2link.rb,
lib/bio-ucsc/mm9/chaincavpor3link.rb,
lib/bio-ucsc/mm9/chaingalgal3link.rb,
lib/bio-ucsc/mm9/chaingasacu1link.rb,
lib/bio-ucsc/mm9/chainornana1link.rb,
lib/bio-ucsc/mm9/chainorylat2link.rb,
lib/bio-ucsc/mm9/chainpetmar1link.rb,
lib/bio-ucsc/mm9/chainponabe2link.rb,
lib/bio-ucsc/mm9/chainrhemac2link.rb,
lib/bio-ucsc/ponabe2/chainmm9link.rb,
lib/bio-ucsc/ponabe2/chainornana1.rb,
lib/bio-ucsc/ponabe2/chainrhemac2.rb,
lib/bio-ucsc/pripac1/chaincaerem2.rb,
lib/bio-ucsc/pripac1/chaincb3link.rb,
lib/bio-ucsc/pripac1/chaince6link.rb,
lib/bio-ucsc/rhemac2/chainmm9link.rb,
lib/bio-ucsc/rhemac2/chainponabe2.rb,
lib/bio-ucsc/rhemac2/chainrn4link.rb,
lib/bio-ucsc/rn4/chaincanfam2link.rb,
lib/bio-ucsc/rn4/chaincavpor3link.rb,
lib/bio-ucsc/rn4/chaindanrer4link.rb,
lib/bio-ucsc/rn4/chainequcab1link.rb,
lib/bio-ucsc/rn4/chaingalgal3link.rb,
lib/bio-ucsc/rn4/chainmondom4link.rb,
lib/bio-ucsc/rn4/chainpantro2link.rb,
lib/bio-ucsc/rn4/chainrhemac2link.rb,
lib/bio-ucsc/rn5/chaincanfam2link.rb,
lib/bio-ucsc/rn5/chaincavpor3link.rb,
lib/bio-ucsc/rn5/chaindanrer4link.rb,
lib/bio-ucsc/rn5/chainequcab1link.rb,
lib/bio-ucsc/rn5/chaingalgal3link.rb,
lib/bio-ucsc/rn5/chainmondom4link.rb,
lib/bio-ucsc/rn5/chainpantro2link.rb,
lib/bio-ucsc/rn5/chainrhemac2link.rb,
lib/bio-ucsc/saccer2/t2micron_est.rb,
lib/bio-ucsc/saccer2/t2micron_gap.rb,
lib/bio-ucsc/table_class_detector.rb,
lib/bio-ucsc/taegut1/chaingalgal3.rb,
lib/bio-ucsc/braflo1/chainhg18link.rb,
lib/bio-ucsc/canfam2/chainselflink.rb,
lib/bio-ucsc/saccer2/t2micron_gold.rb,
lib/bio-ucsc/saccer2/t2micron_mrna.rb,
lib/bio-ucsc/pripac1/chaincaepb1link.rb,
lib/bio-ucsc/braflo1/chaingalgal3link.rb,
lib/bio-ucsc/braflo1/chainpetmar1link.rb,
lib/bio-ucsc/canfam2/chainbostau4link.rb,
lib/bio-ucsc/gasacu1/chainanocar1link.rb,
lib/bio-ucsc/gasacu1/chaingalgal3link.rb,
lib/bio-ucsc/gasacu1/chainorylat2link.rb,
lib/bio-ucsc/ponabe2/chainornana1link.rb,
lib/bio-ucsc/ponabe2/chainrhemac2link.rb,
lib/bio-ucsc/pripac1/chaincaerem2link.rb,
lib/bio-ucsc/rhemac2/chainponabe2link.rb,
lib/bio-ucsc/taegut1/chaingalgal3link.rb,
lib/bio-ucsc/saccer2/t2micron_intronEst.rb

Overview

Copyright

Copyright © 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>

License

The Ruby licence (Ryby’s / GPLv2 dual)

this table is actually separated into “chr1_*”, “chr2_*”, etc. This class dynamically define ::Chr1_, ::Chr2_, etc. The find_by_interval calls an appropreate class automatically.

Defined Under Namespace

Modules: Ucsc Classes: GenomicInterval