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#== Ontology
#add_observed_term Ontology
#add_observed_terms Ontology
#add_observed_terms_from_profiles Ontology
#add_profile Ontology
#add_removable_terms Ontology
#add_removable_terms_from_file Ontology
#alternatives_index Ontology
#ancestors_index Ontology
#binom Top Level Namespace
#build_index Ontology
#calc_ancestors_dictionary Ontology
#calc_dictionary Ontology
#calc_profiles_dictionary Ontology
#calc_term_levels Ontology
#calc_term_paths Ontology
#check_ids Ontology
#clean_profile Ontology
#clean_profiles Ontology
#clone Ontology
#compare Ontology
#compare_profiles Ontology
#complex_text_similitude Top Level Namespace
#compute_hyper_prob Top Level Namespace
#compute_relations_to_items Ontology
#ctext_AtoB Top Level Namespace
#cummin Top Level Namespace
#descendants_index Ontology
#dicts Ontology
#exists? Ontology
#expand_items_to_parentals Ontology
#expand_path Ontology
#extract_id Ontology
#file Ontology
#get_IC Ontology
#get_ICMICA Ontology
#get_MICA Ontology
#get_ancestors Ontology
#get_benjaminiHochberg_pvalues Top Level Namespace
#get_childs_table Ontology
#get_descendants Ontology
#get_familiar Ontology
#get_fisher_exact_test Top Level Namespace
#get_frequency Ontology
#get_index_alternatives Ontology
#get_index_child_parent_relations Ontology
#get_index_frequencies Ontology
#get_index_obsoletes Ontology
#get_less_tail Top Level Namespace
#get_main_id Ontology
#get_observed_frequency Ontology
#get_observed_ics_by_onto_and_freq Ontology
#get_ontology_levels Ontology
#get_ontology_levels_from_profiles Ontology
#get_profile Ontology
#get_profile_length_at_percentile Ontology
#get_profile_mean_IC Ontology
#get_profiles_mean_size Ontology
#get_profiles_resnik_dual_ICs Ontology
#get_profiles_sizes Ontology
#get_profiles_terms_frequency Ontology
get_related_ids Ontology
get_related_ids_by_tag Ontology
#get_similarity Ontology
#get_structural_frequency Ontology
#get_term_level Ontology
#get_term_linked_profiles Ontology
#get_terms_linked_profiles Ontology
#get_two_tail Top Level Namespace
#header Ontology
#ics Ontology
info2hash Ontology
#initialize Ontology
#is_alternative? Ontology
#is_number? Ontology
#is_obsolete? Ontology
#is_removable Ontology
#is_removable? Ontology
#items Ontology
#load Ontology
#load_item_relations_to_terms Ontology
load_obo Ontology
#load_profiles Ontology
#max_freqs Ontology
#meta Ontology
mutate Ontology
#obsoletes_index Ontology
#order Top Level Namespace
#parentals_per_profile Ontology
#pmin Top Level Namespace
process_entity Ontology
#profile_names Ontology
#profiles Ontology
#profilesDict Ontology
#read Ontology
#removable_terms Ontology
#remove_alternatives_from_profile Ontology
#remove_ancestors_from_profile Ontology
#remove_removable Ontology
#reset_profiles Ontology
#set_items_from_dict Ontology
#similitude_network Top Level Namespace
#special_tags Ontology
#stanzas Ontology
#structureType Ontology
symbolize_ids Ontology
#term_paths Ontology
#text_similitude Top Level Namespace
#translate Ontology
#translate_id Ontology
#translate_ids Ontology
#translate_name Ontology
#translate_names Ontology
#translate_profiles_ids Ontology
#write Ontology