Method List
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#amino_acids Ulla::Environment
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#blank? StringExtensions
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calculate_pid Ulla::CLI
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#constrained Ulla::EnvironmentFeature
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#constrained? Ulla::EnvironmentFeature
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execute Ulla::CLI
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#freq_array Ulla::Environment
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#group_by_non_residue_labels Ulla::EnvironmentClassHash
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#group_size Ulla::EnvironmentClassHash
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#groups_sorted_by_residue_labels Ulla::EnvironmentClassHash
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#heatmap Ulla::HeatmapArray
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#heatmap NMatrixExtensions
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#increase_residue_count Ulla::Environment
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#initialize Ulla::Environment
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#initialize Ulla::EnvironmentFeature
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#label Ulla::Environment
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#label_combinations Ulla::EnvironmentFeatureArray
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#label_combinations_without_aa_type Ulla::EnvironmentFeatureArray
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#label_set Ulla::Environment
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#labels Ulla::EnvironmentFeature
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#log2 MathExtensions
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#logo_array Ulla::Environment
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#name Ulla::EnvironmentFeature
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#number Ulla::Environment
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#pretty_string NMatrixExtensions
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#pretty_string NArrayExtensions
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print_usage Ulla::CLI
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print_version Ulla::CLI
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#prob_array Ulla::Environment
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#remove_internal_spaces StringExtensions
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#rgb_to_integer StringExtensions
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#silent Ulla::EnvironmentFeature
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#silent? Ulla::EnvironmentFeature
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#smooth_prob_array Ulla::Environment
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#start_with? StringExtensions
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#sum ArrayExtensions
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#symbols Ulla::EnvironmentFeature
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#to_s Ulla::Environment
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#to_s Ulla::EnvironmentFeature