Method List
-
#add_to_dataset Exodb::Cell
-
#add_to_sample Exodb::Variant
-
#alt VCF::Variant
-
#alt_attr VCF
-
#apply_filter Exodb::Variant
-
#begin Exodb::GenomeLocationField
-
#calculate_score Exodb::SNV
-
#can_translated? Exodb::Generef
-
#chrom VCF::Variant
-
#chromosome Exodb::GenomeLocationField
-
connect Exodb
-
#contig VCF
-
#cover? Exodb::GenomeLocationField::ClassMethods
-
create_admin Exodb
-
create_rouser Exodb
-
create_rwuser Exodb
-
create_user Exodb
-
current_database Exodb
-
#dl_occurrent! Exodb::Generef
-
#dl_seq! Exodb::Generef
-
#dl_symbol! Exodb::Generef
-
#end Exodb::GenomeLocationField
-
fetch_variant Exodb::Ensembl::REST
-
#fileformat VCF
-
#filter VCF::Variant
-
#filter_attr VCF
-
#format_attr VCF
-
from_pileup Exodb::Variant
-
get Exodb::Ensembl::REST
-
#get_cds_join Exodb::Isoform
-
#get_cds_seq Exodb::Isoform
-
#get_codon Exodb::Isoform
-
#get_dna_seq Exodb::Isoform
-
#get_exon_join Exodb::Isoform
-
#get_join_str Exodb::Isoform
-
#get_mrna_seq Exodb::Isoform
-
#get_prot_pos Exodb::Isoform
-
#get_prot_seq Exodb::Isoform
-
#get_xref Exodb::XrefsField
-
guess_miriam Exodb::Utils
-
#has_sequence? Exodb::Generef
-
#has_splices? Exodb::Generef
-
#id String
-
#id VCF::Variant
-
#in? Exodb::GenomeLocationField::ClassMethods
-
#info VCF::Variant
-
#info_attr VCF
-
#initialize VCF::Variant
-
#initialize VCF
-
#intersect? Exodb::GenomeLocationField::ClassMethods
-
#is_miriam? String
-
load_indel_from_merge Exodb::Utils
-
load_sample_from_csv Exodb::Utils
-
load_variant_from_ann Exodb::Utils
-
load_variant_from_csv Exodb::Utils
-
load_variant_from_merge Exodb::Utils
-
#location_str Exodb::GenomeLocationField
-
#longest_splice Exodb::Generef
-
#meta VCF
-
#namespace String
-
#open VCF
-
#parse VCF
-
#parse! VCF::Variant
-
#parse_location Exodb::GenomeLocationField
-
#pos VCF::Variant
-
#prot_len Exodb::Isoform
-
#qual VCF::Variant
-
#ref VCF::Variant
-
#rna_len Exodb::Isoform
-
#sample_data VCF::Variant
-
#sample_num VCF
-
#samples VCF
-
session Exodb
-
sessionload! Exodb
-
#start Exodb::GenomeLocationField
-
#stop Exodb::GenomeLocationField
-
#str VCF::Variant
-
#symbol Exodb::Generef
-
#to_seq Exodb::Generef
-
translate! Exodb::Cell
-
#translate! Exodb::Cell
-
upload_generef_from_gff3 Exodb::Utils
-
#variant_num VCF
-
#variants VCF