Method List

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#add_new_individual Biopsy::Generation
#adjust_distributions_using_gradient Biopsy::TabuSearch
#algorithm Biopsy::Experiment
#all_settings Biopsy::Settings
#archive_array Biopsy::Generation
#archive_size Biopsy::SPEA2
#archive_truncation Biopsy::ArchiveGeneration
#backtrack Biopsy::TabuSearch
#backtrack_cutoff Biopsy::TabuSearch
#backtrack_or_continue Biopsy::TabuSearch
#backtracks Biopsy::TabuSearch::Thread
#base_dir Biopsy::Settings
#best Biopsy::TabuSearch::Thread
#best Biopsy::TabuSearch
#best Biopsy::ParameterSweeper
#best Biopsy::GeneticAlgorithm
#best Biopsy::Generation
#best Biopsy::Hood
#best Biopsy::SPEA2
#best_history Biopsy::TabuSearch::Thread
#binary_tournament Biopsy::MatingHandler
#camelize String
#check_constructor Biopsy::Target
#cleanup Biopsy::Experiment
#combinations Biopsy::ParameterSweeper
#constructor_path Biopsy::Target
#count_parameter_permutations Biopsy::Target
#create_tempdir Biopsy::Experiment
#crossover Biopsy::Generation
#crossover Biopsy::MatingHandler
#current Biopsy::TabuSearch
#current Biopsy::TabuSearch::Thread
#current Biopsy::GeneticAlgorithm
#current Biopsy::SPEA2
#current_hood Biopsy::TabuSearch::Thread
#deep_merge Hash
#deep_symbolize Hash
#define_neighbourhood_structure Biopsy::TabuSearch
#density Biopsy::Individual
#dimension_reduce Biopsy::ObjectiveHandler
distance_between_points Biopsy::FitnessAssignment
#distance_to_kth_point Biopsy::Individual
distance_to_origin Biopsy::FitnessAssignment
#distance_to_origin Biopsy::Individual
#distributions Biopsy::TabuSearch::Thread
#draw Biopsy::Distribution
#essential_files FastestOptimum
#essential_files Biopsy::ObjectiveFunction
#fill_archive Biopsy::ArchiveGeneration
find_distance_to_kth_point Biopsy::FitnessAssignment
#finished? Biopsy::GeneticAlgorithm
#finished? Biopsy::ParameterSweeper
#finished? Biopsy::TabuSearch
#finished? Biopsy::SPEA2
#fitness Biopsy::Individual
#further_archive_selection Biopsy::ArchiveGeneration
#generateMutation Biopsy::Generation
#generate_chromosome Biopsy::GeneticAlgorithm
#generate_combinations Biopsy::ParameterSweeper
#generate_distribution Biopsy::Distribution
#generate_neighbour Biopsy::Hood
#generate_parameters Biopsy::Target
#generation_no Biopsy::GeneticAlgorithm
#get_children_to_score Biopsy::SPEA2
#get_homog Biopsy::GeneticAlgorithm
#get_population Biopsy::Generation
#get_population Biopsy::GeneticAlgorithm
#gzip_intermediates Biopsy::Settings
#homogeneous_test Biopsy::Generation
#hood_no Biopsy::TabuSearch
#initialize Biopsy::SPEA2
#initialize Biopsy::GeneticAlgorithm
#initialize Biopsy::Experiment
#initialize Biopsy::TabuSearch
#initialize Biopsy::Settings
#initialize Biopsy::Hood
#initialize Biopsy::MatingHandler
#initialize Biopsy::Distribution
#initialize Biopsy::ObjectiveHandler
#initialize Biopsy::Individual
#initialize Biopsy::ParameterSweeper
#initialize Biopsy::Generation
#inputs Biopsy::Experiment
#is_tabu? Biopsy::Hood
#iterations_since_best Biopsy::TabuSearch::Thread
#jump_cutoff Biopsy::TabuSearch
#keep_intermediates Biopsy::Settings
#knows_starting_point? Biopsy::SPEA2
#knows_starting_point? Biopsy::ParameterSweeper
#knows_starting_point? Biopsy::TabuSearch
#last? Biopsy::Generation
#last? Biopsy::Hood
#last_tempdir Biopsy::ObjectiveHandler
#limit_sd Biopsy::Distribution
#load Biopsy::Settings
#load_by_name Biopsy::Target
#load_constructor Biopsy::Target
#load_next_thread Biopsy::TabuSearch
#load_objectives Biopsy::ObjectiveHandler
#load_target Biopsy::Experiment
#loaded Biopsy::TabuSearch::Thread
#locate_definition Biopsy::Target
#locate_file Biopsy::Target
#log Biopsy::TabuSearch
#log_setup Biopsy::TabuSearch
#log_teardown Biopsy::TabuSearch
#loosen Biopsy::Distribution
map_points_distance Biopsy::FitnessAssignment
#mate Biopsy::MatingHandler
#mating_process Biopsy::Generation
#max_hood_size Biopsy::TabuSearch
#mean Array
#method_missing Biopsy::Target
#mutation Biopsy::MatingHandler
#name Biopsy::Target
#next Biopsy::Hood
#next_candidate Biopsy::TabuSearch
#next_candidate Biopsy::GeneticAlgorithm
#next_chromosome Biopsy::Generation
#next_hood Biopsy::TabuSearch
#objectives Biopsy::ObjectiveHandler
#objectives_dir Biopsy::Settings
#objectives_subset Biopsy::Settings
#options Biopsy::Target
#output Biopsy::Target
#outputs Biopsy::Experiment
#parameters Biopsy::Individual
#parameters Biopsy::Target
#populate Biopsy::Hood
#population_array Biopsy::Generation
#population_homogenosity Biopsy::Generation
#population_size Biopsy::SPEA2
#print_progress Biopsy::Experiment
#probability_of_cross Biopsy::SPEA2
#random_parameter_set Biopsy::SPEA2
#random_start_point Biopsy::ParameterSweeper
#random_start_point Biopsy::TabuSearch
#random_start_point Biopsy::Experiment
#raw_fitness Biopsy::Individual
#recent_scores Biopsy::TabuSearch::Thread
#recent_scores_combination_test Biopsy::TabuSearch
#reproduce Biopsy::MatingHandler
#respond_to? Biopsy::Target
#retain_intermediates Biopsy::Experiment
#run Biopsy::MatingHandler
#run Biopsy::ObjectiveFunction
#run Biopsy::ArchiveGeneration
run Biopsy::FitnessAssignment
#run Biopsy::Experiment
#run FastestOptimum
#run Biopsy::GeneticAlgorithm
#run Biopsy::Target
#run_for_output Biopsy::ObjectiveHandler
#run_generation Biopsy::Generation
#run_iteration Biopsy::Experiment
#run_objective Biopsy::ObjectiveHandler
#run_one_iteration Biopsy::SPEA2
#run_one_iteration Biopsy::TabuSearch
#run_one_iteration Biopsy::GeneticAlgorithm
#run_one_iteration Biopsy::ParameterSweeper
#run_one_mating_iteration Biopsy::SPEA2
#save Biopsy::Settings
#score Biopsy::Individual
score_density Biopsy::FitnessAssignment
#score_history Biopsy::TabuSearch::Thread
score_raw_fitness Biopsy::FitnessAssignment
#sd Biopsy::Distribution
#sd_for_param Biopsy::TabuSearch
#sd_increment_proportion Biopsy::TabuSearch
#select_algorithm Biopsy::Experiment
#select_mating_population Biopsy::MatingHandler
#select_starting_point Biopsy::SPEA2
#select_starting_point Biopsy::Experiment
#select_starting_point Biopsy::TabuSearch
#select_starting_point Biopsy::ParameterSweeper
#selection_process Biopsy::Generation
#set_defaults Biopsy::Settings
#set_sd_min Biopsy::Distribution
#setup Biopsy::TabuSearch
#setup Biopsy::ParameterSweeper
#setup Biopsy::SPEA2
#setup_threads Biopsy::TabuSearch
#shortname Biopsy::Target
#standard_deviations Biopsy::TabuSearch::Thread
#start Biopsy::Experiment
#starting_sd_divisor Biopsy::TabuSearch
#store_config Biopsy::Target
#sweep_cutoff Biopsy::Settings
#sym_to_ivar_sym Biopsy::TabuSearch
#tabu Biopsy::TabuSearch::Thread
#target Biopsy::Experiment
#target_dir Biopsy::Settings
#tighten Biopsy::Distribution
#to_s Biopsy::Settings
#update_best? Biopsy::Generation
#update_best? Biopsy::Hood
#update_best? Biopsy::TabuSearch
#update_best? Biopsy::SPEA2
#update_best? Biopsy::GeneticAlgorithm
#update_best? Biopsy::ParameterSweeper
#update_distribution Biopsy::TabuSearch
#update_ga Biopsy::GeneticAlgorithm
#update_neighbourhood_structure Biopsy::TabuSearch
#update_recent_scores Biopsy::TabuSearch
#valid_ruby? Biopsy::Target
which File
#write_data Biopsy::TabuSearch