Class: USCoreTestKit::ClinicalNoteTypeTest

Inherits:
Inferno::Test
  • Object
show all
Includes:
SearchTest
Defined in:
lib/us_core_test_kit/custom_groups/clinical_note_type_test.rb

Constant Summary collapse

REQUIRED_CATEGORIES = 
['LP29708-2', 'LP7839-6', 'LP29684-5'].freeze

Constants included from WellKnownCodeSystems

WellKnownCodeSystems::HL7_CODE_SYSTEMS, WellKnownCodeSystems::WELL_KNOWN_CODE_SYSTEMS

Constants included from FHIRResourceNavigation

FHIRResourceNavigation::DAR_EXTENSION_URL, FHIRResourceNavigation::PRIMITIVE_DATA_TYPES

Instance Method Summary collapse

Methods included from SearchTest

#all_comparator_searches_tested?, #all_provenance_revinclude_search_params, #all_scratch_resources, #all_search_params, #all_search_params_present?, #all_search_variants_tested?, #any_valid_search_params?, #array_of_codes, #check_resource_against_params, #check_search_response, #date_comparator_value, #default_search_values, #element_has_valid_value?, #empty_search_params_message, #fetch_and_assert_all_bundled_resources, #filter_conditions, #filter_devices, #fixed_value_search_param_name, #fixed_value_search_param_values, #fixed_value_search_params, #initial_search_variant_test_records, #is_reference_match?, #no_resources_skip_message, #patient_id_list, #patient_id_param?, #patient_search?, #perform_comparator_searches, #perform_multiple_or_search_test, #perform_post_search, #perform_reference_with_type_search, #perform_search, #perform_search_with_status, #perform_search_with_system, #prefer_well_known_code_system, #references_to_save, #required_comparators, #resource_matches_param?, #run_provenance_revinclude_search_test, #run_search_test, #save_delayed_references, #save_resource_reference, #scratch_resources_for_patient, #search_and_check_response, #search_param_paths, #search_param_value, #search_params_tag, #search_params_with_values, #search_variant_test_records, #status_search_param_name, #status_search_values, #test_medication_inclusion, #unable_to_resolve_params_message, #unescape_search_value

Methods included from WellKnownCodeSystems

include?

Methods included from ResourceSearchParamChecker

#element_has_valid_value?, #resource_matches_param?, #search_param_paths

Methods included from FHIRResourceNavigation

#find_a_value_at, #find_slice_via_discriminator, #get_next_value, #get_primitive_type_value, #resolve_path, #verify_slice_by_values

Methods included from DateSearchValidation

#fhir_date_comparer, #get_fhir_datetime_range, #get_fhir_period_range, #is_date?, #validate_date_search, #validate_datetime_search, #validate_period_search

Instance Method Details

#diagnostic_report_categories_found(patient_id) ⇒ Object 



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# File 'lib/us_core_test_kit/custom_groups/clinical_note_type_test.rb', line 57

def diagnostic_report_categories_found(patient_id)
  search_params = { patient: patient_id }
  status_values = ['registered,partial,preliminary,final,amended,corrected,appended,cancelled,entered-in-error,unknown']
  search_and_check_response(search_params, 'DiagnosticReport')

  if response[:status] == 400
    perform_search_with_status(
      params,
      patient_id,
      status_search_values: status_values,
      resource_type: 'DiagnosticReport'
    )
  end

  resources = fetch_all_bundled_resources(resource_type: 'DiagnosticReport')
                .select { |resource| resource.resourceType == 'DiagnosticReport' }

  scratch[:diagnostic_report_attachments] ||= {}
  scratch[:diagnostic_report_attachments][patient_id] ||= {}
  attachments = scratch[:diagnostic_report_attachments][patient_id]

  codes_found =
    resources.flat_map do |resource|
      codes = resource.category&.flat_map do |category|
        category.coding&.map { |coding| coding.code if REQUIRED_CATEGORIES.include?(coding.code) }
      end.compact

      if codes.present?
        resource.presentedForm
          &.select { |attachment| attachment&.url.present? && !attachments.key?(attachment&.url) }
          &.each { |attachment| attachments[attachment.url] = resource.id }
      end

      codes
    end

  codes_found.compact.uniq
end

#document_reference_types_found(patient_id) ⇒ Object 



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# File 'lib/us_core_test_kit/custom_groups/clinical_note_type_test.rb', line 23

def document_reference_types_found(patient_id)
  search_params = { patient: patient_id }
  status_values = ['current,superseded,entered-in-error']

  search_and_check_response(search_params, 'DocumentReference')

  if response[:status] == 400
    perform_search_with_status(
      params,
      patient_id,
      status_search_values: status_values,
      resource_type: 'DocumentReference'
    )
  end

  resources = fetch_all_bundled_resources(resource_type: 'DocumentReference')
                .select { |resource| resource.resourceType == 'DocumentReference' }

  scratch[:document_reference_attachments] ||= {}
  scratch[:document_reference_attachments][patient_id] ||= {}
  attachments = scratch[:document_reference_attachments][patient_id]

  codes_found =
    resources.flat_map do |resource|
      resource.content
        &.select { |content| content.attachment&.url.present? && !attachments.key?(content.attachment&.url) }
        &.each { |content| attachments[content.attachment.url] = resource.id }

      resource.type&.coding&.map { |coding| coding.code }
    end

  codes_found.compact.uniq
end

#tags(_params) ⇒ Object

Disable tagging requests since this test doesn’t have properties defined. TODO: investigate whether we need to tag these for granular scope checking.



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# File 'lib/us_core_test_kit/custom_groups/clinical_note_type_test.rb', line 19

def tags(_params)
  nil
end