Module: JohnsonMerit220Visit1Preproc

Defined in:
lib/custom_methods/JohnsonMerit220Visit1Preproc.rb

Instance Method Summary collapse

Instance Method Details

#preproc_visit ⇒ Object Also known as: perform

Runs the preprocessing job, including spm job customization, run spm job, and handling motion issues. This function assumes a destination directory is set up; it will overwrite preexisting data. Careful!



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# File 'lib/custom_methods/JohnsonMerit220Visit1Preproc.rb', line 6

def preproc_visit
  flash "Spatial Preprocessing Subject: #{@subid}"
  setup_directory(@procdir, "PREPROC")
  
  Dir.chdir(@procdir) do
    link_files_into_proc
    check_permissions(image_files)
     run_preproc_mfile
    deal_with_motion
  end
end