Class: Bio::SQL::Seqfeature

Inherits:

DummyBase

• Object
• ActiveRecord::Base
• DummyBase
• Bio::SQL::Seqfeature

Defined in:

lib/bio/io/biosql/seqfeature.rb

Instance Method Summary

• #sequence ⇒ Object

  get the subsequence described by the locations objects.

• #translate(*args) ⇒ Object

  translate the subsequences represented by the feature and its locations not considering the qualifiers Return a Bio::Sequence::AA object.

Instance Method Details

#sequence ⇒ Object

get the subsequence described by the locations objects

# File 'lib/bio/io/biosql/seqfeature.rb', line 20

def sequence
    return self.locations.inject(Bio::Sequence::NA.new("")){|seq, location| seq<<location.sequence}
end

#translate(*args) ⇒ Object

translate the subsequences represented by the feature and its locations not considering the qualifiers Return a Bio::Sequence::AA object

# File 'lib/bio/io/biosql/seqfeature.rb', line 27

def translate(*args)
  self.sequence.translate(*args)
end