Method: Bio::PAML::Common#dump_parameters

Defined in:
lib/bio/appl/paml/common.rb

#dump_parameters ⇒ Object

Shows parameters (content of control file) as a string. The string can be used for control file.

Returns

string representation of the parameters (String)



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# File 'lib/bio/appl/paml/common.rb', line 270

def dump_parameters
  keyorder = DEFAULT_PARAMETERS_ORDER
  keys = parameters.keys
  str = ''
  keys.sort do |x, y|
    (keyorder.index(x) || (keyorder.size + keys.index(x))) <=>
      (keyorder.index(y) || (keyorder.size + keys.index(y)))
  end.each do |key|
    value = parameters[key]
    # Note: spaces are required in both side of the "=".
    str.concat "#{key.to_s} = #{value.to_s}\n" if value
  end
  str
end