Module: Exodb::XrefsField

Extended by:

ActiveSupport::Concern

Included in:

Isoform, Reference

Defined in:

lib/exodb/datamodel/xrefsfield.rb

Defined Under Namespace

Modules: ClassMethods

Instance Method Summary

• #get_xref(ns = 'urn:miriam:refseq') ⇒ String

  convert genomic position to codon position.

Instance Method Details

#get_xref(ns = 'urn:miriam:refseq') ⇒ String

convert genomic position to codon position

Parameters:

• namespace (String)

Returns:

• (String) —

  codon position

# File 'lib/exodb/datamodel/xrefsfield.rb', line 38

def get_xref(ns = 'urn:miriam:refseq')
	xref = nil
	self[:xrefs].each {|e| xref = e if "urn:miriam:#{e.namespace}" == ns}
	return xref
end