Module: EnsemblREST::Overlap

Defined in:
lib/ensemblrest/overlap.rb

Class Method Summary collapse

Class Method Details

.id(id, features = [], options = {}) ⇒ JSON

Retrieves features (e.g. genes, transcripts, variations etc.) that overlap a region defined by the given identifier.

structural_variation, somatic_structural_variation, constrained, regulatory, segmentation, motif, chipseq, array_probe



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# File 'lib/ensemblrest/overlap.rb', line 34

def id(id, features = [], options = {})
  return EnsemblREST.get("overlap/id/#{id}", {format: 'json', feature: features}.merge(options))
end

.region(region, features = [], species = 'human', options = {}) ⇒ JSON

Request multiple types of sequence by a list of regions.

structural_variation, somatic_structural_variation, constrained, regulatory, segmentation, motif, chipseq, array_probe



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# File 'lib/ensemblrest/overlap.rb', line 23

def region(region, features = [], species = 'human', options = {})
  return EnsemblREST.get("overlap/region/#{species}/#{region}", {format: 'json', feature: features}.merge(options))
end

.translation(id, options = {}) ⇒ JSON

Retrieve features related to a specific Translation as described by its stable ID (e.g. domains, variations).



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# File 'lib/ensemblrest/overlap.rb', line 43

def translation(id, options = {})
  return EnsemblREST.get("overlap/translation/#{id}", {format: 'json'}.merge(options))
end