Class: Ensembl::Variation::GenotypeCode

Inherits:
ModelBase show all
Defined in:
lib/ensembl/variation/activerecord.rb

Class Method Summary collapse

Methods included from PrimaryKeyOverrides

#primary_key

Methods inherited from Connection

connection

Methods included from TableNameOverrides

#table_name

Class Method Details

.genotype_for(genotype_code_id) ⇒ Object 



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# File 'lib/ensembl/variation/activerecord.rb', line 152

def self.genotype_for(genotype_code_id)
  joins(:allele_code).where(genotype_code_id: genotype_code_id).order(:haplotype_id).pluck('allele_code.allele').join('|')
end

.genotypes_for(genotype_code_ids) ⇒ Object 



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# File 'lib/ensembl/variation/activerecord.rb', line 156

def self.genotypes_for(genotype_code_ids)
  includes(:allele_code).where(genotype_code_id: genotype_code_ids).pluck('genotype_code.genotype_code_id','genotype_code.haplotype_id','allele_code.allele').group_by{|r| r[0]}.map{|k,v| [k,v.sort_by{|f,s| f[1]<=>s[1]}.map{|v| v[2]}.join('|')]}
end

.genotypes_hash_for(genotype_code_ids) ⇒ Object 



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# File 'lib/ensembl/variation/activerecord.rb', line 160

def self.genotypes_hash_for(genotype_code_ids)
  genotypes_for(genotype_code_ids).to_h
end