Class: Bioinform::WordwiseBackground

Inherits:

Object

• Object
• Bioinform::WordwiseBackground

Includes:

Background, FrequencyCalculations

Defined in:

lib/bioinform/background.rb

Constant Summary

UniformFrequencies =

[0.25, 0.25, 0.25, 0.25]

WordwiseCounts =

[1, 1, 1, 1]

Constants included from Background

Background::Uniform, Background::Wordwise

Instance Method Summary

• #==(other) ⇒ Object
• #counts ⇒ Object
• #frequencies ⇒ Object
• #to_s ⇒ Object
• #volume ⇒ Object
• #wordwise? ⇒ Boolean

Methods included from Background

from_frequencies, from_gc_content, from_string, uniform, wordwise

Methods included from FrequencyCalculations

#mean, #mean_square, #symmetric?

Instance Method Details

#==(other) ⇒ Object

# File 'lib/bioinform/background.rb', line 82

def ==(other)
  self.class == other.class
end

#counts ⇒ Object

# File 'lib/bioinform/background.rb', line 78

def counts; WordwiseCounts; end

#frequencies ⇒ Object

# File 'lib/bioinform/background.rb', line 77

def frequencies; UniformFrequencies; end

#to_s ⇒ Object

# File 'lib/bioinform/background.rb', line 86

def to_s
  'wordwise'
end

#volume ⇒ Object

# File 'lib/bioinform/background.rb', line 79

def volume; 4; end

#wordwise? ⇒ Boolean

Returns:

• (Boolean)

# File 'lib/bioinform/background.rb', line 80

def wordwise?; true; end