Module: Bio::Ucsc::Dp3
- Extended by:
- TableClassDetector
- Defined in:
- lib/bio-ucsc/dp3.rb,
lib/bio-ucsc/dp3/est.rb,
lib/bio-ucsc/dp3/gap.rb,
lib/bio-ucsc/dp3/gold.rb,
lib/bio-ucsc/dp3/mrna.rb,
lib/bio-ucsc/dp3/rmsk.rb,
lib/bio-ucsc/dp3/chaindm3.rb,
lib/bio-ucsc/dp3/intronest.rb,
lib/bio-ucsc/dp3/chaindm3link.rb
Defined Under Namespace
Classes: ChainDm3, ChainDm3Link, DBConnection, Est, Gap, Gold, IntronEst, Mrna, Rmsk
Constant Summary collapse
- CHROMS =
%w(chr2 chr3 chr4_group1 chr4_group2 chr4_group3 chr4_group4 chr4_group5 chrXL_group1a chrXL_group1e chrXL_group3a chrXL_group3b chrXR_group3a chrXR_group5 chrXR_group6 chrXR_group8 chrXR_group9 chrU)
Constants included from TableClassDetector
TableClassDetector::COMMON_CLASS_METHODS, TableClassDetector::PARAMETERS, TableClassDetector::RESERVED_METHODS, TableClassDetector::UPPERCASED_TABLE_PREFIX
Class Method Summary collapse
Methods included from TableClassDetector
bed, const_missing, genepred, generic, psl, rmsk
Class Method Details
.connect(param = Hash.new) ⇒ Object
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# File 'lib/bio-ucsc/dp3.rb', line 24 def self.connect(param = Hash.new) DBConnection.db_adapter = param[:db_adapter] if param[:db_adapter] DBConnection.db_host = param[:db_host] if param[:db_host] DBConnection.db_username = param[:db_username] if param[:db_username] DBConnection.password = param[:password] if param[:password] DBConnection.connect end |
.default ⇒ Object
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# File 'lib/bio-ucsc/dp3.rb', line 20 def self.default DBConnection.default end |