Module: Bio::Ucsc::BosTau4

Extended by:
TableClassDetector
Defined in:
lib/bio-ucsc/bostau4.rb

Defined Under Namespace

Classes: DBConnection

Constant Summary collapse

CHROMS = 
%w(Chr1 Chr2 Chr3 Chr4 Chr5 Chr6 Chr7 Chr8 Chr9
Chr10 Chr11 Chr12 Chr13 Chr14 Chr15 Chr16 Chr17 Chr18 Chr19 Chr20
Chr21 Chr22 Chr23 Chr24 Chr25 Chr26 Chr27 Chr28 Chr29 ChrX)

Constants included from TableClassDetector

TableClassDetector::COMMON_CLASS_METHODS, TableClassDetector::PARAMETERS, TableClassDetector::RESERVED_METHODS, TableClassDetector::UPPERCASED_TABLE_PREFIX

Class Method Summary collapse

Methods included from TableClassDetector

bed, const_missing, genepred, generic, psl, rmsk

Class Method Details

.connect(param = Hash.new) ⇒ Object 



23
24
25
26
27
28
29
 
# File 'lib/bio-ucsc/bostau4.rb', line 23

def self.connect(param = Hash.new)
  DBConnection.db_adapter = param[:db_adapter] if param[:db_adapter]
  DBConnection.db_host = param[:db_host] if param[:db_host]
  DBConnection.db_username = param[:db_username] if param[:db_username]
  DBConnection.password = param[:password] if param[:password]
  DBConnection.connect
end

.default ⇒ Object 



19
20
21
 
# File 'lib/bio-ucsc/bostau4.rb', line 19

def self.default
  DBConnection.default
end