Module: Bio::Ucsc::TetNig2

Extended by:
TableClassDetector
Defined in:
lib/bio-ucsc/tetnig2.rb,
lib/bio-ucsc/tetnig2/mrna.rb

Defined Under Namespace

Classes: DBConnection, Mrna

Constant Summary collapse

CHROMS = 
%w(Chr1 Chr2 Chr3 Chr4 Chr5 Chr6 Chr7 Chr8 Chr9 Chr10
Chr11 Chr12 Chr13 Chr14 Chr15 Chr16 Chr17 Chr18 Chr19 
Chr20 Chr21 ChrM ChrUn_random)

Constants included from TableClassDetector

Bio::Ucsc::TableClassDetector::COMMON_CLASS_METHODS, Bio::Ucsc::TableClassDetector::PARAMETERS, Bio::Ucsc::TableClassDetector::RESERVED_METHODS, Bio::Ucsc::TableClassDetector::UPPERCASED_TABLE_PREFIX

Class Method Summary collapse

Methods included from TableClassDetector

bed, const_missing, genepred, generic, psl, rmsk

Class Method Details

.connect(param = Hash.new) ⇒ Object 



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# File 'lib/bio-ucsc/tetnig2.rb', line 24

def self.connect(param = Hash.new)
  DBConnection.db_adapter = param[:db_adapter] if param[:db_adapter]
  DBConnection.db_host = param[:db_host] if param[:db_host]
  DBConnection.db_username = param[:db_username] if param[:db_username]
  DBConnection.password = param[:password] if param[:password]
  DBConnection.connect
end

.default ⇒ Object 



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# File 'lib/bio-ucsc/tetnig2.rb', line 20

def self.default
  DBConnection.default
end