Module: Bio::Ucsc::PriPac1

Extended by:
TableClassDetector
Defined in:
lib/bio-ucsc/pripac1.rb,
lib/bio-ucsc/pripac1/gap.rb,
lib/bio-ucsc/pripac1/gold.rb,
lib/bio-ucsc/pripac1/rmsk.rb,
lib/bio-ucsc/pripac1/chaincb3.rb,
lib/bio-ucsc/pripac1/chaince6.rb,
lib/bio-ucsc/pripac1/chaincaepb1.rb,
lib/bio-ucsc/pripac1/chaincaerem2.rb,
lib/bio-ucsc/pripac1/chaincb3link.rb,
lib/bio-ucsc/pripac1/chaince6link.rb,
lib/bio-ucsc/pripac1/chaincaepb1link.rb,
lib/bio-ucsc/pripac1/chaincaerem2link.rb

Defined Under Namespace

Classes: ChainCaePb1, ChainCaePb1Link, ChainCaeRem2, ChainCaeRem2Link, ChainCb3, ChainCb3Link, ChainCe6, ChainCe6Link, DBConnection, Gap, Gold, Rmsk

Constant Summary collapse

CHROMS = 
%w(chrUn)

Constants included from TableClassDetector

TableClassDetector::COMMON_CLASS_METHODS, TableClassDetector::PARAMETERS, TableClassDetector::RESERVED_METHODS, TableClassDetector::UPPERCASED_TABLE_PREFIX

Class Method Summary collapse

Methods included from TableClassDetector

bed, const_missing, genepred, generic, psl, rmsk

Class Method Details

.connect(param = Hash.new) ⇒ Object 



22
23
24
25
26
27
28
 
# File 'lib/bio-ucsc/pripac1.rb', line 22

def self.connect(param = Hash.new)
  DBConnection.db_adapter = param[:db_adapter] if param[:db_adapter]
  DBConnection.db_host = param[:db_host] if param[:db_host]
  DBConnection.db_username = param[:db_username] if param[:db_username]
  DBConnection.password = param[:password] if param[:password]
  DBConnection.connect
end

.default ⇒ Object 



18
19
20
 
# File 'lib/bio-ucsc/pripac1.rb', line 18

def self.default
  DBConnection.default
end