Module: Bio::Ucsc::Fr2

Extended by:
TableClassDetector
Defined in:
lib/bio-ucsc/fr2.rb,
lib/bio-ucsc/fr2/est.rb,
lib/bio-ucsc/fr2/gap.rb,
lib/bio-ucsc/fr2/gold.rb,
lib/bio-ucsc/fr2/mrna.rb,
lib/bio-ucsc/fr2/rmsk.rb,
lib/bio-ucsc/fr2/chainmm9.rb,
lib/bio-ucsc/fr2/intronest.rb,
lib/bio-ucsc/fr2/chaingalgal3.rb,
lib/bio-ucsc/fr2/chaingasacu1.rb,
lib/bio-ucsc/fr2/chainmm9link.rb,
lib/bio-ucsc/fr2/chainorylat2.rb,
lib/bio-ucsc/fr2/chaingalgal3link.rb,
lib/bio-ucsc/fr2/chaingasacu1link.rb,
lib/bio-ucsc/fr2/chainorylat2link.rb

Defined Under Namespace

Classes: ChainGalGal3, ChainGalGal3Link, ChainGasAcu1, ChainGasAcu1Link, ChainMm9, ChainMm9Link, ChainOryLat2, ChainOryLat2Link, DBConnection, Est, Gap, Gold, IntronEst, Mrna, Rmsk

Constant Summary collapse

CHROMS = 
%w(ChrUn ChrM)

Constants included from TableClassDetector

TableClassDetector::COMMON_CLASS_METHODS, TableClassDetector::PARAMETERS, TableClassDetector::RESERVED_METHODS, TableClassDetector::UPPERCASED_TABLE_PREFIX

Class Method Summary collapse

Methods included from TableClassDetector

bed, const_missing, genepred, generic, psl, rmsk

Class Method Details

.connect(param = Hash.new) ⇒ Object 



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# File 'lib/bio-ucsc/fr2.rb', line 20

def self.connect(param = Hash.new)
  DBConnection.db_adapter = param[:db_adapter] if param[:db_adapter]
  DBConnection.db_host = param[:db_host] if param[:db_host]
  DBConnection.db_username = param[:db_username] if param[:db_username]
  DBConnection.password = param[:password] if param[:password]
  DBConnection.connect
end

.default ⇒ Object 



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# File 'lib/bio-ucsc/fr2.rb', line 16

def self.default
  DBConnection.default
end