Genecache

Simple and fast conversion of GENE IDs. Major source of data is http://biodb.jp. Conversion tables are downloaded and stored in local SQLite database for very fast access.

Installation

Add this line to your application's Gemfile:

gem 'genecache'

And then execute:

$ bundle

Or install it yourself as:

$ gem install genecache

Usage

require 'genecache'

GeneCache.convert('hsa', 'ensg_id', 'omim_id', 'ENSG00000142192') # APP 
# returns ['104300', '104760', '605714']

Contributing

  1. Fork it
  2. Create your feature branch (git checkout -b my-new-feature)
  3. Commit your changes (git commit -am 'Add some feature')
  4. Push to the branch (git push origin my-new-feature)
  5. Create new Pull Request