Module: Biopsy

Defined in:
lib/biopsy/settings.rb,
lib/biopsy/target.rb,
lib/biopsy/version.rb,
lib/biopsy/experiment.rb,
lib/biopsy/optimisers/spea2.rb,
lib/biopsy/objective_handler.rb,
lib/biopsy/objective_function.rb,
lib/biopsy/optimisers/tabu_search.rb,
lib/biopsy/optimisers/parameter_sweeper.rb

Overview

TODO:

  • make distributions draw elements from the range, not just from distribution (DONE)

  • test on real SOAPdt data (in progress)

  • make code to run 100 times for a particular dataset, capture the trajectory, and plot the progress over time along with a histogram of the data distribution

  • plot SD and step-size over time

  • capture data about convergence (done for toy data, need to repeat for other data)

Defined Under Namespace

Modules: VERSION Classes: ArchiveGeneration, Combinator, Distribution, Experiment, FitnessAssignment, Generation, Hood, Individual, MatingHandler, ObjectiveFunction, ObjectiveHandler, ObjectiveHandlerError, ParameterSweeper, SPEA2, Settings, SettingsError, TabuSearch, Target, TargetLoadError, TypeLoadError